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Vision4D / arivis Pro
Scientific Image Visualization and AI-assisted Analysis
Setting Up arivis Vision4D
- System Requirements for arivis Pro/Vision4D
- Installing and configuring arivis Pro
- Activating, updating and transferring licenses
- Using the GPU Package Installation for arivis Vision4D
- Using arivis on laptops with a GPU
- arivis software products and Virtual Machines
- How to: arivis Vision4D on Amazon AWS
- Using arivis Vision4D over Remote Desktop
- How to: install arivis Vision4D on Apple hardware
- Why does arivis not use all the computer resources?
- Creating a System Report
Using arivis Vision4D
- Getting started with arivis Pro/Vision4D
- Calibrating datasets
- How to use : «Intensity range and visualization setting»
- How can I measure distances in an images?
- How to use local Deep Learning with the arivis AI toolkit
- How to: « Set Opacity in 3D rendering »
- How to color volumes by depth in 3D view
- How do I export CSV files out of arivis Vision4D?
- Background Subtraction vs Shading correction
- How to: «Drawing objects interactively»
- How to : «Configure the Result Storage operator»
- How to perform : «SIS file optimization»
- How to create Maximum Intensity Projections in arivis Pro / Vision 4D
- Image Analysis in ZEISS arivis Pro (basic)
- Using Spine Detection with Neuron Tracer
Imaging Basics
Tutorials
- arivis Vision4D Video Tutorials Library
- How do I measure the ratio of objects inside other objects?
- How to: Import and move objects in a 3D volume
- How to: create a Random sub-population of objects in arivis Pro
- How to perform : «the Compartmentalization analysis»
- Use case: the Compartments operation
- How to: Contextualise Segmentation to Atlas Regions
- How do you do segmentation in Vision4D?
- Creating movies in arivis
Image pre-processing, stitching and Volume fusion
Time-Lapse Analysis
Scripting and interaction with other programs
- How-to: Segment objects into equal parts in Vision 4D/arivis pro
- Image Registration for Multiplexing Experiments in arivis Pro
- Converting Cellpose models for use in arivis
- Install Anaconda Python for Vision4D
- How to perform : «Contrast limited adaptive histogram equalization (CLAHE)»
- Objects contacts analysis
- Colour Deconvolution
- How to create : «XYZ matrix of sub-volumes»
- How to create : «Heat-Map – density distribution»
- How to create : «Freely XY Oriented Sub Volumes»
- How to perform : «Objects density (heat-map) and object distribution gradient plotting (profile)»
- How to create : «Concentric Sub Volume - Matryoshka Dolls»
- How to create : «Spiral Oriented Sub Volume»
Vision4D Pipeline examples
- Sample Pipeline «Detect cells based on Membranes»
- Sample Pipeline «Detect cells using seeded region growing»
- Sample Pipeline: «Colocalize Particles»
- Sample Pipeline «Detect big structures Auto»
- Sample Pipeline «Compartmentalize cells or particles »
- Sample Pipeline «Detect big structures Manual»
- Sample Pipeline «Detect cells based on membranes with enhancement»
- Sample Pipeline «Detect cells or particles»
- Sample Pipeline «Detect cells or particles using seeded region growing»
- Sample Pipeline «Detect small, rounded, structures using Blob Finder
- Sample Pipeline «Track cells or particles with lineage»
- Sample pipeline: wound healing assays
- Sample Pipeline «Detect small structures using watershed»
- Sample Pipeline «Track cells or particles»
- Using manually drawn regions in pipelines
Licensing setup
arivis AI: Machine Learning and Deep Learning
Release Notes
- arivis Pro 4.2 Release Notes June 2024
- arivis Vision4D 4.1.2 Release Notes November 2023
- arivis Vision4D 4.1.1 Release Notes July 2023
- arivis Vision4D 4.1 Release Notes March 2023
- arivis Vision4D 4.0 Release Notes October 2022
- arivis Vision4D 3.6.2 Release Notes June 2022
- arivis Vision4D 3.6.1 Release Notes May 2022
- arivis Vision4D 3.6 Release Notes February 2022
- arivis Vision4D 3.5.1 Release Notes November 2021
- arivis Vision4D 3.5 Release Notes August 2021
- arivis Vision4D 3.4 Release Notes January 2021
- arivis Vision4D 3.3 Release Notes July 2020
- arivis Vision4D 3.2 Release Notes April 2020
- arivis Vision4D 3.1.4 Release Notes February 2020
- arivis Vision4D 3.1.3 Release Notes November 2019
- arivis Vision4D 3.1.2 Release Notes October 2019
- arivis Vision4D 3.0.1 Release Notes October 2018
- arivis Vision4D 2.12.6 Release Notes August 2017
- arivis Vision4D 2.12.5 Release Notes June 2017
- arivis Vision4D 2.12.4 Release Notes December 2016
- arivis Vision4D 2.12.3 Release Notes October 2016
- arivis Vision4D 2.12.2 Release Notes June 2016
- arivis Vision4D 2.12.1 Release Notes April 2016
- arivis Vision4D 2.12 Release Notes January 2016
- arivis Vision4D 2.11.2 Release Notes July 2015
- arivis Vision4D 2.11 Release Notes April 2015
- arivis pro 4.3 release notes March 2025