arivis Vision4D 4.1 Release Notes March 2023
Summary of changes in arivis Vision4D 4.1, released 27 March 2023
New & Noteworthy:
- New optional module: arivis AI toolkit features a complete Deep Learning workflow right in Vision4D - annotate, train & inference
- Various improvements in the tracing workflow
- Wellplate Editor to manually assign imagesets to wells or fields of a well
arivis AI Toolkit:
- new: use the Draw Tool to draw segments to annotate regions for classes
- new: utilizing of sparse annotations to overcome the need to draw on every pixel
- new: drawn objects are sorted by class order - pixels are assigned to the topmost one (no need to cut out overlaps)
- new: add and reuse existing segments for class definition
- new: automatic clustering based on annotated backgound possible
- new: run and monitor the DL training process right from Vision4D
- new: directly open the trained DL model in the Analysis Pipeline for inference
- new: export the trained DL model as ONNX
- new: additional installer package to setup a whole DL Python environment
Tools:
- new: Draw Tool has a context menu and better keyboard shortcut support
- new: Draw Tool is aware of the DL Training panel
- new: Draw Tool allows to change class to draw by shortcut or context menu (in DL Trainer mode)
- improved: Trace Tool - connect to a cell body segment
- improved: Trace Tool - optimized remove branch
- improved: 'unable to connect' messages in the Trace Tool are more understandable
Analysis:
- new: 'Neuron Tracer' (from the Segmentation category) has been renamed to 'Neurite Tracer'
- new: 'Neuron Tracer (from Cell Body)' has been renamed to 'Neuron Tracer'
- new: Neuron Tracer preview shows all parts in the same color
- new: Neuron Tracer preview shows the filtered parts slighly dimmed (instead of hiding them completely)
- improved: parameter labels in the Neuron Tracer are more precise
- improved: default threshold value and threshold warnings in the Neuron Tracer
- improved: tooltips in the Neuron Tracer
- fix: if the tracking operation had a lot of results, it could happen that the last tracks were not displayed
- fix: prevent the creation of (almost) empty traces in the Neuron Tracer
- fix: ensure that a preview progress label is always displayed immediately
Visualization:
- new: display of starting points can be turned off for traces
- improved: optimized cone generation for traces in 4D Viewer
- improved: fallback to line based visualization if cones for traces would exceed memory
- improved: remember last used Z-Projection value for trace visualization in 2D
- fix: minor problem with RGB Projection in 4D Viewer
Data Handling:
- new: Wellplate Editor to manually assign imagesets to wells or fields of a well
- new: semi-automatic assign imagesets to well or field positions based on the name of the imageset (in the Wellplate Editor)
- new: additional import scenario to import wells as imagesets and open the Wellplate Editor afterwards (for manual assignemnt)
- fix: some LaVision data could not be imported correctly for TileSorter
- fix: problems with some CZI if imported for TileSorter
General:
- new: Predictive Analytics service as optional install
- new: gRPC service connector
- new: ZenBridge is able to work with gRPC service connector (optionally)
- improved: included Sentinel driver and HASP Lib have been upgraded to version 8.5
- fix: sort order in field selector of Navigator (for wellplate data)
- fix: rare crash in the Transform Surface dialog
- additional minor fixes and improvements